Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | CFBP13507 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1181068 bp
Thymine Count
1214519 bp
Guanine Count
1761031 bp
Cytosine Count
1725290 bp
Genome Length
5881917 bp
Protein-coding Genes
5114 genes
Non-Coding Genes
83 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| formate dehydrogenase accessory sulfurtransferase fdhd | PviCFBP13507_23770 | Not Available | Negative | 5245851 - 5246687 | 29719.8 |
| lysr family transcriptional regulator | PviCFBP13507_23775 | Not Available | Negative | 5246791 - 5247672 | 32625.5 |
| peptidoglycan-binding protein lysm | PviCFBP13507_23780 | Not Available | Positive | 5247824 - 5248270 | 16215.3 |
| gmp/imp nucleotidase | PviCFBP13507_23790 | Not Available | Negative | 5248701 - 5249363 | 25428.4 |
| adp compounds hydrolase nude | PviCFBP13507_23795 | Not Available | Positive | 5249463 - 5250029 | 20978.2 |
| 3'(2'),5'-bisphosphate nucleotidase | PviCFBP13507_23800 | Not Available | Positive | 5250026 - 5250868 | 30192.8 |
| thioesterase | PviCFBP13507_23805 | Not Available | Negative | 5251105 - 5251590 | 18146.7 |
| sigma-54-dependent fis family transcriptional regulator | PviCFBP13507_23810 | Not Available | Negative | 5251577 - 5252962 | 50497.6 |
| sensor histidine kinase | PviCFBP13507_23815 | Not Available | Negative | 5252959 - 5254773 | 67278.0 |
| dtdp-4-dehydrorhamnose 3,5-epimerase | PviCFBP13507_23820 | Not Available | Negative | 5254993 - 5255538 | 20348.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
