Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | CFBP13507 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1181068 bp
Thymine Count
1214519 bp
Guanine Count
1761031 bp
Cytosine Count
1725290 bp
Genome Length
5881917 bp
Protein-coding Genes
5114 genes
Non-Coding Genes
83 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type vi secretion system protein tssa | PviCFBP13507_23670 | Not Available | Negative | 5217274 - 5218305 | 37316.8 |
| type vi secretion system-associated fha domain protein tagh | PviCFBP13507_23675 | Not Available | Positive | 5218689 - 5220143 | 52559.2 |
| type vi secretion system lipoprotein tssj | PviCFBP13507_23680 | Not Available | Positive | 5220192 - 5220698 | 18041.6 |
| type vi secretion system baseplate subunit tssk | PviCFBP13507_23685 | Not Available | Positive | 5220714 - 5222048 | 48835.5 |
| type vi secretion system protein tssl | PviCFBP13507_23690 | Not Available | Positive | 5222055 - 5223368 | 47764.5 |
| type vi secretion system membrane subunit tssm | PviCFBP13507_23695 | Not Available | Positive | 5223365 - 5226868 | 128454.0 |
| type vi secretion system-associated protein tagf | PviCFBP13507_23700 | Not Available | Positive | 5226865 - 5227518 | 23174.5 |
| serine/threonine protein phosphatase | PviCFBP13507_23705 | Not Available | Positive | 5227518 - 5228246 | 26342.4 |
| serine/threonine protein kinase | PviCFBP13507_23710 | Not Available | Positive | 5228258 - 5231308 | 110211.0 |
| abc transporter atp-binding protein | PviCFBP13507_23715 | Not Available | Positive | 5231308 - 5232024 | 25736.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
