Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | CFBP13507 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1181068 bp
Thymine Count
1214519 bp
Guanine Count
1761031 bp
Cytosine Count
1725290 bp
Genome Length
5881917 bp
Protein-coding Genes
5114 genes
Non-Coding Genes
83 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type vi secretion system tip protein vgrg | PviCFBP13507_23620 | Not Available | Negative | 5207129 - 5207434 | 11457.8 |
| type vi secretion system atpase tssh | PviCFBP13507_23625 | Not Available | Negative | 5207477 - 5210158 | 97916.8 |
| type vi secretion system baseplate subunit tssg | PviCFBP13507_23630 | Not Available | Negative | 5210151 - 5211203 | 39632.7 |
| type vi secretion system baseplate subunit tssf | PviCFBP13507_23635 | Not Available | Negative | 5211167 - 5213026 | 69680.1 |
| type vi secretion system baseplate subunit tsse | PviCFBP13507_23640 | Not Available | Negative | 5213023 - 5213538 | 18981.8 |
| hypothetical protein | PviCFBP13507_23645 | Not Available | Negative | 5213532 - 5213981 | 16377.6 |
| hypothetical protein | PviCFBP13507_23650 | Not Available | Negative | 5213978 - 5214436 | 17587.9 |
| type vi secretion system tube protein hcp | PviCFBP13507_23655 | Not Available | Negative | 5214508 - 5214996 | 17697.1 |
| type vi secretion system contractile sheath large subunit | PviCFBP13507_23660 | Not Available | Negative | 5215154 - 5216647 | 55699.5 |
| type vi secretion system contractile sheath small subunit | PviCFBP13507_23665 | Not Available | Negative | 5216663 - 5217178 | 18737.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
