Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | CFBP13507 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1181068 bp
Thymine Count
1214519 bp
Guanine Count
1761031 bp
Cytosine Count
1725290 bp
Genome Length
5881917 bp
Protein-coding Genes
5114 genes
Non-Coding Genes
83 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| peptide abc transporter | PviCFBP13507_23360 | Not Available | Negative | 5152400 - 5153347 | 34296.5 |
| abc transporter substrate-binding protein | PviCFBP13507_23365 | Not Available | Negative | 5153382 - 5154884 | 55307.1 |
| oligopeptide abc transporter atp-binding protein | PviCFBP13507_23370 | Not Available | Negative | 5154881 - 5155999 | 40902.6 |
| dipeptide abc transporter atp-binding protein dppd | PviCFBP13507_23375 | Not Available | Negative | 5155996 - 5157000 | 35413.3 |
| fadr family transcriptional regulator | PviCFBP13507_23380 | Not Available | Negative | 5156997 - 5157746 | 27702.9 |
| hypothetical protein | PviCFBP13507_23385 | Not Available | Negative | 5158211 - 5159290 | 39528.9 |
| rhizopine-binding protein | PviCFBP13507_23390 | Not Available | Negative | 5159482 - 5160408 | 33475.4 |
| hydroxypyruvate isomerase | PviCFBP13507_23395 | Not Available | Negative | 5160477 - 5161265 | 28446.9 |
| dehydrogenase | PviCFBP13507_23400 | Not Available | Negative | 5161262 - 5162284 | 36180.2 |
| sigma-54-dependent fis family transcriptional regulator | PviCFBP13507_23405 | Not Available | Positive | 5162476 - 5164467 | 72136.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
