Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | CFBP13507 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1181068 bp
Thymine Count
1214519 bp
Guanine Count
1761031 bp
Cytosine Count
1725290 bp
Genome Length
5881917 bp
Protein-coding Genes
5114 genes
Non-Coding Genes
83 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | PviCFBP13507_22590 | Not Available | Positive | 4981192 - 4981974 | 28692.0 |
| amino acid abc transporter substrate-binding protein | PviCFBP13507_22595 | Not Available | Negative | 4981978 - 4982733 | 27882.8 |
| trypsin | PviCFBP13507_22600 | Not Available | Positive | 4982966 - 4984486 | 54986.1 |
| imidazole glycerol phosphate synthase cyclase subunit | PviCFBP13507_22605 | Not Available | Negative | 4984543 - 4985313 | 27135.6 |
| 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase | PviCFBP13507_22610 | Not Available | Negative | 4985349 - 4986086 | 25906.4 |
| duf2164 domain-containing protein | PviCFBP13507_22615 | Not Available | Negative | 4986110 - 4986370 | 10173.2 |
| imidazole glycerol phosphate synthase subunit hish | PviCFBP13507_22620 | Not Available | Negative | 4986376 - 4987014 | 23608.1 |
| imidazoleglycerol-phosphate dehydratase hisb | PviCFBP13507_22625 | Not Available | Negative | 4987014 - 4987607 | 22025.3 |
| aromatic amino acid aminotransferase | PviCFBP13507_22630 | Not Available | Negative | 4987983 - 4989179 | 43161.7 |
| mfs transporter | PviCFBP13507_22635 | Not Available | Negative | 4989352 - 4991013 | 58779.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
