Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | CFBP13507 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1181068 bp
Thymine Count
1214519 bp
Guanine Count
1761031 bp
Cytosine Count
1725290 bp
Genome Length
5881917 bp
Protein-coding Genes
5114 genes
Non-Coding Genes
83 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dihydroxyacetone kinase subunit l | PviCFBP13507_02050 | Not Available | Negative | 474286 - 474930 | 22451.8 |
| dihydroxyacetone kinase | PviCFBP13507_02055 | Not Available | Negative | 474934 - 475935 | 35347.7 |
| erythritol/l-threitol dehydrogenase | PviCFBP13507_02060 | Not Available | Negative | 475976 - 477091 | 41053.8 |
| d-threitol dehydrogenase | PviCFBP13507_02065 | Not Available | Negative | 477119 - 477874 | 26462.9 |
| sugar abc transporter substrate-binding protein | PviCFBP13507_02070 | Not Available | Negative | 478084 - 479094 | 36046.1 |
| abc transporter permease | PviCFBP13507_02075 | Not Available | Negative | 479147 - 480124 | 34082.7 |
| d-xylose abc transporter atp-binding protein | PviCFBP13507_02080 | Not Available | Negative | 480121 - 481608 | 53698.1 |
| ribose 5-phosphate isomerase b | PviCFBP13507_02085 | Not Available | Positive | 481887 - 482348 | 16252.5 |
| sugar-binding transcriptional regulator | PviCFBP13507_02090 | Not Available | Positive | 482412 - 483392 | 35430.7 |
| membrane-bound pqq-dependent dehydrogenase, glucose/quinate/shikimate family | PviCFBP13507_02095 | Not Available | Positive | 483655 - 486021 | 85807.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
