Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | CFBP13507 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1181068 bp
Thymine Count
1214519 bp
Guanine Count
1761031 bp
Cytosine Count
1725290 bp
Genome Length
5881917 bp
Protein-coding Genes
5114 genes
Non-Coding Genes
83 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lysr family transcriptional regulator | PviCFBP13507_01950 | Not Available | Negative | 450630 - 451535 | 32968.8 |
| hypothetical protein | PviCFBP13507_01955 | Not Available | Positive | 451690 - 454737 | 112048.0 |
| dienelactone hydrolase family protein | PviCFBP13507_01960 | Not Available | Negative | 455001 - 455888 | 32378.3 |
| ggdef domain-containing protein | PviCFBP13507_01965 | Not Available | Positive | 456203 - 457294 | 40933.1 |
| geranylgeranyl pyrophosphate synthase | PviCFBP13507_01970 | Not Available | Negative | 457266 - 458180 | 33551.5 |
| type 2 isopentenyl-diphosphate delta-isomerase | PviCFBP13507_01975 | Not Available | Positive | 458347 - 459396 | 36664.1 |
| zeaxanthin glucosyltransferase | PviCFBP13507_01980 | Not Available | Positive | 459393 - 460673 | 46613.5 |
| lycopene cyclase | PviCFBP13507_01985 | Not Available | Positive | 460663 - 461829 | 44367.3 |
| phytoene desaturase | PviCFBP13507_01990 | Not Available | Positive | 461826 - 463316 | 54547.1 |
| phytoene synthase | PviCFBP13507_01995 | Not Available | Positive | 463313 - 464266 | 35451.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
