Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | CFBP13507 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1181068 bp
Thymine Count
1214519 bp
Guanine Count
1761031 bp
Cytosine Count
1725290 bp
Genome Length
5881917 bp
Protein-coding Genes
5114 genes
Non-Coding Genes
83 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nadp-dependent isocitrate dehydrogenase | PviCFBP13507_21205 | Not Available | Negative | 4685243 - 4687468 | 80759.1 |
| cold shock domain protein cspd | PviCFBP13507_21215 | Not Available | Negative | 4688601 - 4688870 | 9382.11 |
| atp-dependent clp protease adapter clps | PviCFBP13507_21220 | Not Available | Positive | 4689093 - 4689455 | 13545.2 |
| atp-dependent clp protease atp-binding subunit clpa | PviCFBP13507_21225 | Not Available | Positive | 4689486 - 4691759 | 83503.8 |
| translation initiation factor if-1 | PviCFBP13507_21230 | Not Available | Negative | 4691873 - 4692091 | 8303.06 |
| arginyltransferase | PviCFBP13507_21235 | Not Available | Negative | 4692193 - 4692900 | 27846.3 |
| leucyl/phenylalanyl-trna--protein transferase | PviCFBP13507_21240 | Not Available | Negative | 4692950 - 4693639 | 26095.1 |
| dna translocase ftsk | PviCFBP13507_21250 | Not Available | Positive | 4694119 - 4696521 | 87460.5 |
| outer membrane lipoprotein chaperone lola | PviCFBP13507_21255 | Not Available | Positive | 4696591 - 4697214 | 22875.5 |
| replication-associated recombination protein a | PviCFBP13507_21260 | Not Available | Positive | 4697234 - 4698556 | 48923.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
