Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | CFBP13507 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1181068 bp
Thymine Count
1214519 bp
Guanine Count
1761031 bp
Cytosine Count
1725290 bp
Genome Length
5881917 bp
Protein-coding Genes
5114 genes
Non-Coding Genes
83 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type vi secretion system lipoprotein tssj | PviCFBP13507_20575 | Not Available | Positive | 4550881 - 4551363 | 17935.5 |
| type vi secretion system baseplate subunit tssk | PviCFBP13507_20580 | Not Available | Positive | 4551366 - 4552697 | 49245.2 |
| hypothetical protein | PviCFBP13507_20585 | Not Available | Positive | 4552697 - 4553584 | 33717.4 |
| type vi secretion system membrane subunit tssm | PviCFBP13507_20590 | Not Available | Positive | 4553581 - 4557087 | 132364.0 |
| serine/threonine protein kinase | PviCFBP13507_20595 | Not Available | Positive | 4557084 - 4557992 | 33969.2 |
| gnat family n-acetyltransferase | PviCFBP13507_20600 | Not Available | Positive | 4558051 - 4558509 | 17859.9 |
| metallophosphoesterase | PviCFBP13507_20605 | Not Available | Negative | 4558541 - 4558999 | 16770.3 |
| duf2314 domain-containing protein | PviCFBP13507_20610 | Not Available | Positive | 4559180 - 4560346 | 42957.5 |
| taurine catabolism dioxygenase | PviCFBP13507_20615 | Not Available | Positive | 4560445 - 4561284 | 30792.7 |
| hypothetical protein | PviCFBP13507_20620 | Not Available | Positive | 4561437 - 4561718 | 9893.81 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
