Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | CFBP13507 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1181068 bp
Thymine Count
1214519 bp
Guanine Count
1761031 bp
Cytosine Count
1725290 bp
Genome Length
5881917 bp
Protein-coding Genes
5114 genes
Non-Coding Genes
83 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type vi secretion system tube protein hcp | PviCFBP13507_20525 | Not Available | Negative | 4537453 - 4537980 | 19714.2 |
| type vi secretion system protein tssa | PviCFBP13507_20530 | Not Available | Positive | 4538510 - 4540060 | 59898.0 |
| type vi secretion system contractile sheath small subunit | PviCFBP13507_20535 | Not Available | Positive | 4540089 - 4540586 | 18204.0 |
| type vi secretion system contractile sheath large subunit | PviCFBP13507_20540 | Not Available | Positive | 4540615 - 4542090 | 55741.9 |
| type vi secretion system baseplate subunit tsse | PviCFBP13507_20545 | Not Available | Positive | 4542087 - 4542497 | 15349.4 |
| type vi secretion system baseplate subunit tssf | PviCFBP13507_20550 | Not Available | Positive | 4542605 - 4544392 | 67373.6 |
| type vi secretion system baseplate subunit tssg | PviCFBP13507_20555 | Not Available | Positive | 4544356 - 4545360 | 38037.7 |
| type vi secretion system atpase tssh | PviCFBP13507_20560 | Not Available | Positive | 4545373 - 4547985 | 95698.5 |
| sigma-54-dependent fis family transcriptional regulator | PviCFBP13507_20565 | Not Available | Positive | 4547996 - 4549516 | 55678.7 |
| type vi secretion system-associated fha domain protein tagh | PviCFBP13507_20570 | Not Available | Positive | 4549702 - 4550859 | 43069.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
