Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | CFBP13507 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1181068 bp
Thymine Count
1214519 bp
Guanine Count
1761031 bp
Cytosine Count
1725290 bp
Genome Length
5881917 bp
Protein-coding Genes
5114 genes
Non-Coding Genes
83 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| iclr family transcriptional regulator | PviCFBP13507_00040 | Not Available | Negative | 6458 - 7231 | 28593.1 |
| sarcosine oxidase | PviCFBP13507_00045 | Not Available | Negative | 7322 - 7894 | 20475.2 |
| 5s ribosomal rna | Not Available | Not Available | Positive | 8650 - 8765 | Not Available |
| 5s ribosomal rna | Not Available | Not Available | Positive | 8874 - 8989 | Not Available |
| aminomethyltransferase | PviCFBP13507_00050 | Not Available | Negative | 7898 - 10804 | 106135.0 |
| sarcosine oxidase subunit delta | PviCFBP13507_00055 | Not Available | Negative | 10801 - 11106 | 11735.8 |
| sarcosine oxidase subunit beta | PviCFBP13507_00060 | Not Available | Negative | 11132 - 12373 | 45249.5 |
| bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase fold | PviCFBP13507_00065 | Not Available | Negative | 12355 - 13260 | 31714.4 |
| formyltetrahydrofolate deformylase | PviCFBP13507_00070 | Not Available | Negative | 13257 - 14123 | 32789.4 |
| helix-turn-helix domain-containing protein | PviCFBP13507_00075 | Not Available | Negative | 14586 - 15191 | 22442.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
