Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | CFBP13507 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1181068 bp
Thymine Count
1214519 bp
Guanine Count
1761031 bp
Cytosine Count
1725290 bp
Genome Length
5881917 bp
Protein-coding Genes
5114 genes
Non-Coding Genes
83 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sugar abc transporter substrate-binding protein | PviCFBP13507_19910 | Not Available | Positive | 4418274 - 4419233 | 33705.8 |
| sugar abc transporter atp-binding protein | PviCFBP13507_19915 | Not Available | Positive | 4419288 - 4420841 | 56091.1 |
| abc transporter permease | PviCFBP13507_19920 | Not Available | Positive | 4420838 - 4421830 | 34221.6 |
| laci family transcriptional regulator | PviCFBP13507_19925 | Not Available | Positive | 4421832 - 4422848 | 36387.8 |
| ribokinase | PviCFBP13507_19930 | Not Available | Positive | 4422879 - 4423799 | 31367.5 |
| d-ribose pyranase | PviCFBP13507_19935 | Not Available | Positive | 4423796 - 4424200 | 14543.0 |
| nucleoside hydrolase | PviCFBP13507_19940 | Not Available | Positive | 4424241 - 4425266 | 36687.4 |
| hypothetical protein | PviCFBP13507_19945 | Not Available | Negative | 4425289 - 4425483 | 6977.39 |
| hypothetical protein | PviCFBP13507_19950 | Not Available | Positive | 4425796 - 4426131 | 11702.9 |
| cold-shock protein | PviCFBP13507_19955 | Not Available | Negative | 4426197 - 4426409 | 7657.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
