Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | CFBP13507 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1181068 bp
Thymine Count
1214519 bp
Guanine Count
1761031 bp
Cytosine Count
1725290 bp
Genome Length
5881917 bp
Protein-coding Genes
5114 genes
Non-Coding Genes
83 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ribosome modulation factor | PviCFBP13507_19660 | Not Available | Negative | 4366721 - 4366936 | 8192.81 |
| bifunctional 23s rrna (guanine(2069)-n(7))-methyltransferase rlmk/23s rrna (guanine(2445)-n(2))-methyltransferase rlml | PviCFBP13507_19665 | Not Available | Positive | 4367526 - 4369781 | 84909.4 |
| ggdef domain-containing protein | PviCFBP13507_19670 | Not Available | Positive | 4369920 - 4372292 | 88317.0 |
| d-alanyl-d-alanine carboxypeptidase/d-alanyl-d-alanine-endopeptidase | PviCFBP13507_19675 | Not Available | Negative | 4372326 - 4373795 | 52953.9 |
| duf469 domain-containing protein | PviCFBP13507_19680 | Not Available | Positive | 4374155 - 4374499 | 12829.1 |
| hybrid sensor histidine kinase/response regulator | PviCFBP13507_19685 | Not Available | Negative | 4374603 - 4378241 | 134817.0 |
| dna-binding response regulator | PviCFBP13507_19690 | Not Available | Negative | 4378250 - 4378888 | 23779.3 |
| response regulator | PviCFBP13507_19695 | Not Available | Negative | 4379205 - 4379603 | 14670.3 |
| deoxyguanosinetriphosphate triphosphohydrolase | PviCFBP13507_19700 | Not Available | Negative | 4379864 - 4381195 | 49814.5 |
| diguanylate phosphodiesterase | PviCFBP13507_19705 | Not Available | Negative | 4381259 - 4382422 | 44019.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
