Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | CFBP13507 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1181068 bp
Thymine Count
1214519 bp
Guanine Count
1761031 bp
Cytosine Count
1725290 bp
Genome Length
5881917 bp
Protein-coding Genes
5114 genes
Non-Coding Genes
83 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ompa family protein | PviCFBP13507_19610 | Not Available | Positive | 4351503 - 4352537 | 36551.0 |
| uroporphyrinogen-iii c-methyltransferase | PviCFBP13507_19615 | Not Available | Negative | 4352637 - 4353398 | 26759.6 |
| nitrate reductase | PviCFBP13507_19620 | Not Available | Negative | 4353409 - 4356129 | 99099.6 |
| assimilatory nitrite reductase large subunit | PviCFBP13507_19625 | Not Available | Negative | 4356126 - 4357355 | 44408.7 |
| bifunctional protein-serine/threonine kinase/phosphatase | PviCFBP13507_19630 | Not Available | Negative | 4357646 - 4359307 | 61678.9 |
| nark/nasa family nitrate transporter | PviCFBP13507_19635 | Not Available | Negative | 4359315 - 4360526 | 42590.7 |
| glycoside hydrolase family 68 protein | PviCFBP13507_19640 | Not Available | Positive | 4361951 - 4363201 | 46137.2 |
| antar domain-containing protein | PviCFBP13507_19645 | Not Available | Negative | 4363494 - 4364069 | 21652.6 |
| nitrate abc transporter substrate-binding protein | PviCFBP13507_19650 | Not Available | Negative | 4364084 - 4365295 | 44328.5 |
| quinone-dependent dihydroorotate dehydrogenase | PviCFBP13507_19655 | Not Available | Positive | 4365547 - 4366578 | 36309.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
