Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | CFBP13507 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1181068 bp
Thymine Count
1214519 bp
Guanine Count
1761031 bp
Cytosine Count
1725290 bp
Genome Length
5881917 bp
Protein-coding Genes
5114 genes
Non-Coding Genes
83 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| fe/s-dependent 2-methylisocitrate dehydratase acnd | PviCFBP13507_19560 | Not Available | Positive | 4339396 - 4341984 | 94112.5 |
| 2-methylaconitate cis-trans isomerase prpf | PviCFBP13507_19565 | Not Available | Positive | 4342053 - 4343237 | 41182.3 |
| kinase/pyrophosphorylase | PviCFBP13507_19570 | Not Available | Negative | 4343432 - 4344250 | 30989.8 |
| phosphoenolpyruvate synthase | PviCFBP13507_19575 | Not Available | Positive | 4344443 - 4346818 | 86021.1 |
| alpha/beta hydrolase | PviCFBP13507_19580 | Not Available | Positive | 4346986 - 4347972 | 36347.5 |
| putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase | PviCFBP13507_19585 | Not Available | Positive | 4348064 - 4348552 | 17386.9 |
| zinc transporter zntb | PviCFBP13507_19590 | Not Available | Positive | 4348564 - 4349559 | 38000.7 |
| crfx protein | PviCFBP13507_19595 | Not Available | Positive | 4349647 - 4349895 | 8764.34 |
| transporter | PviCFBP13507_19600 | Not Available | Positive | 4349898 - 4350722 | 28937.4 |
| rna polymerase subunit sigma | PviCFBP13507_19605 | Not Available | Positive | 4350805 - 4351395 | 23282.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
