Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | CFBP13507 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1181068 bp
Thymine Count
1214519 bp
Guanine Count
1761031 bp
Cytosine Count
1725290 bp
Genome Length
5881917 bp
Protein-coding Genes
5114 genes
Non-Coding Genes
83 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| response regulator | PviCFBP13507_18985 | Not Available | Positive | 4226269 - 4227324 | 39145.0 |
| dna cytosine methyltransferase | PviCFBP13507_18990 | Not Available | Negative | 4227360 - 4228334 | 36381.0 |
| restriction endonuclease | PviCFBP13507_18995 | Not Available | Positive | 4228415 - 4229596 | 44597.2 |
| very short patch repair endonuclease | PviCFBP13507_19000 | Not Available | Positive | 4229604 - 4230044 | 16921.7 |
| phage antirepressor protein | PviCFBP13507_19005 | Not Available | Positive | 4230382 - 4230912 | 20716.1 |
| hypothetical protein | PviCFBP13507_19010 | Not Available | Positive | 4231132 - 4232475 | 49942.6 |
| hypothetical protein | PviCFBP13507_19015 | Not Available | Negative | 4232566 - 4233282 | 26802.3 |
| type vi secretion system tube protein hcp | PviCFBP13507_19020 | Not Available | Positive | 4233572 - 4234057 | 17937.3 |
| hypothetical protein | PviCFBP13507_19030 | Not Available | Positive | 4235221 - 4235409 | 7429.07 |
| chemotaxis protein | PviCFBP13507_19035 | Not Available | Negative | 4235802 - 4237367 | 56530.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
