Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | CFBP13507 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1181068 bp
Thymine Count
1214519 bp
Guanine Count
1761031 bp
Cytosine Count
1725290 bp
Genome Length
5881917 bp
Protein-coding Genes
5114 genes
Non-Coding Genes
83 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| methyltransferase | PviCFBP13507_18025 | Not Available | Positive | 4039763 - 4040419 | 24128.8 |
| thioredoxin | PviCFBP13507_18030 | Not Available | Positive | 4040502 - 4041374 | 32186.6 |
| hypothetical protein | PviCFBP13507_18035 | Not Available | Negative | 4041432 - 4041785 | 12444.9 |
| nuclear transport factor 2 family protein | PviCFBP13507_18040 | Not Available | Negative | 4041847 - 4042269 | 16341.8 |
| duf2796 domain-containing protein | PviCFBP13507_18045 | Not Available | Positive | 4042534 - 4043121 | 21202.9 |
| abc transporter atp-binding protein | PviCFBP13507_18050 | Not Available | Positive | 4043191 - 4043901 | 25888.1 |
| peptide abc transporter permease | PviCFBP13507_18055 | Not Available | Positive | 4043903 - 4045168 | 46283.6 |
| duf3299 domain-containing protein | PviCFBP13507_18060 | Not Available | Positive | 4045177 - 4045701 | 19135.4 |
| outer membrane protein ompw | PviCFBP13507_18065 | Not Available | Positive | 4045806 - 4046492 | 24434.2 |
| nad-dependent dehydratase | PviCFBP13507_18070 | Not Available | Negative | 4047415 - 4048344 | 33082.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
