Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | CFBP13507 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1181068 bp
Thymine Count
1214519 bp
Guanine Count
1761031 bp
Cytosine Count
1725290 bp
Genome Length
5881917 bp
Protein-coding Genes
5114 genes
Non-Coding Genes
83 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| septal ring lytic transglycosylase rlpa family protein | PviCFBP13507_17775 | Not Available | Negative | 3992070 - 3993095 | 36732.7 |
| lytic murein transglycosylase b | PviCFBP13507_17780 | Not Available | Negative | 3993095 - 3994102 | 37482.5 |
| rod shape-determining protein roda | PviCFBP13507_17785 | Not Available | Negative | 3994120 - 3995265 | 41770.7 |
| penicillin-binding protein 2 | PviCFBP13507_17790 | Not Available | Negative | 3995255 - 3997150 | 70260.4 |
| 23s rrna (pseudouridine(1915)-n(3))-methyltransferase rlmh | PviCFBP13507_17795 | Not Available | Negative | 3997179 - 3997646 | 17728.7 |
| ribosome silencing factor | PviCFBP13507_17800 | Not Available | Negative | 3997656 - 3998042 | 13831.4 |
| nicotinate-nucleotide adenylyltransferase | PviCFBP13507_17805 | Not Available | Negative | 3998106 - 3998774 | 24486.4 |
| glutamate-5-semialdehyde dehydrogenase | PviCFBP13507_17810 | Not Available | Negative | 3998788 - 4000053 | 44888.0 |
| dna-3-methyladenine glycosylase | PviCFBP13507_17815 | Not Available | Positive | 4000325 - 4000996 | 25055.0 |
| phosphatase pap2 family protein | PviCFBP13507_17820 | Not Available | Positive | 4001000 - 4002316 | 47098.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
