Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | CFBP13507 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1181068 bp
Thymine Count
1214519 bp
Guanine Count
1761031 bp
Cytosine Count
1725290 bp
Genome Length
5881917 bp
Protein-coding Genes
5114 genes
Non-Coding Genes
83 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna-binding response regulator | PviCFBP13507_17520 | Not Available | Positive | 3932637 - 3933425 | 28919.7 |
| ggdef domain-containing protein | PviCFBP13507_17525 | Not Available | Negative | 3933440 - 3935095 | 62090.3 |
| duf2333 domain-containing protein | PviCFBP13507_17530 | Not Available | Positive | 3935498 - 3936577 | 39797.3 |
| nudix hydrolase | PviCFBP13507_17535 | Not Available | Positive | 3936577 - 3937122 | 20398.2 |
| stress response translation initiation inhibitor ycih | PviCFBP13507_17540 | Not Available | Positive | 3937296 - 3937667 | 12759.5 |
| arginine decarboxylase | PviCFBP13507_17545 | Not Available | Positive | 3937782 - 3939695 | 71183.6 |
| type iv secretion protein rhs | PviCFBP13507_17550 | Not Available | Positive | 3939863 - 3941281 | 53534.3 |
| alpha/beta hydrolase | PviCFBP13507_17555 | Not Available | Positive | 3941371 - 3942267 | 32387.0 |
| mate family efflux transporter | PviCFBP13507_17560 | Not Available | Negative | 3942264 - 3943604 | 47933.6 |
| hypothetical protein | PviCFBP13507_17565 | Not Available | Positive | 3944144 - 3949093 | 179940.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
