Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | CFBP13507 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1181068 bp
Thymine Count
1214519 bp
Guanine Count
1761031 bp
Cytosine Count
1725290 bp
Genome Length
5881917 bp
Protein-coding Genes
5114 genes
Non-Coding Genes
83 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| thymidylate synthase | PviCFBP13507_17315 | Not Available | Positive | 3887249 - 3887842 | 21297.4 |
| abc transporter | PviCFBP13507_17320 | Not Available | Positive | 3888365 - 3889918 | 55522.5 |
| abc transporter permease | PviCFBP13507_17325 | Not Available | Positive | 3889930 - 3891030 | 39378.6 |
| abc transporter permease | PviCFBP13507_17330 | Not Available | Positive | 3891030 - 3891956 | 32572.3 |
| short-chain dehydrogenase | PviCFBP13507_17335 | Not Available | Positive | 3892153 - 3892836 | 24285.2 |
| 8-oxoguanine deaminase | PviCFBP13507_17345 | Not Available | Positive | 3893341 - 3894696 | 48939.9 |
| hypothetical protein | PviCFBP13507_17350 | Not Available | Positive | 3894788 - 3897271 | 92313.2 |
| tm2 domain-containing protein | PviCFBP13507_17355 | Not Available | Negative | 3897431 - 3897742 | 11383.1 |
| calcium:proton antiporter | PviCFBP13507_17360 | Not Available | Negative | 3897866 - 3898957 | 38734.4 |
| fe(3+)-dicitrate abc transporter substrate-binding protein fecb | PviCFBP13507_17365 | Not Available | Positive | 3899257 - 3900177 | 32829.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
