Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | CFBP13507 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1181068 bp
Thymine Count
1214519 bp
Guanine Count
1761031 bp
Cytosine Count
1725290 bp
Genome Length
5881917 bp
Protein-coding Genes
5114 genes
Non-Coding Genes
83 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| fe2+-dependent dioxygenase | PviCFBP13507_17160 | Not Available | Positive | 3854049 - 3854729 | 25623.4 |
| hypothetical protein | PviCFBP13507_17165 | Not Available | Positive | 3854732 - 3855529 | 28965.5 |
| type iii plp-dependent enzyme | PviCFBP13507_17170 | Not Available | Negative | 3855568 - 3856731 | 43421.2 |
| rhs repeat-associated core domain-containing protein | PviCFBP13507_17175 | Not Available | Positive | 3857438 - 3858328 | 32683.0 |
| abc transporter atp-binding protein | PviCFBP13507_17180 | Not Available | Negative | 3858405 - 3859574 | 43496.4 |
| abc transporter permease | PviCFBP13507_17185 | Not Available | Negative | 3859571 - 3860224 | 22897.4 |
| glycine/betaine abc transporter substrate-binding protein | PviCFBP13507_17190 | Not Available | Negative | 3860238 - 3861131 | 33156.6 |
| abc transporter permease | PviCFBP13507_17195 | Not Available | Negative | 3861146 - 3861859 | 24850.6 |
| peptide chain release factor 3 | PviCFBP13507_17205 | Not Available | Positive | 3862204 - 3863787 | 59725.4 |
| dead/deah box helicase | PviCFBP13507_17210 | Not Available | Negative | 3864090 - 3865418 | 48582.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
