Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | CFBP13507 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1181068 bp
Thymine Count
1214519 bp
Guanine Count
1761031 bp
Cytosine Count
1725290 bp
Genome Length
5881917 bp
Protein-coding Genes
5114 genes
Non-Coding Genes
83 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| c4-dicarboxylate abc transporter | PviCFBP13507_16750 | Not Available | Positive | 3758007 - 3759029 | 37437.3 |
| trap transporter small permease | PviCFBP13507_16755 | Not Available | Positive | 3759093 - 3759620 | 19209.4 |
| trap transporter large permease | PviCFBP13507_16760 | Not Available | Positive | 3759621 - 3760901 | 45159.8 |
| eama family transporter | PviCFBP13507_16765 | Not Available | Positive | 3760992 - 3761963 | 34374.1 |
| aldose 1-epimerase | PviCFBP13507_16770 | Not Available | Positive | 3761938 - 3762807 | 31998.6 |
| hypothetical protein | PviCFBP13507_16775 | Not Available | Negative | 3762817 - 3763101 | 10141.2 |
| hypothetical protein | PviCFBP13507_16780 | Not Available | Negative | 3763188 - 3763385 | 7017.75 |
| rna polymerase subunit sigma | PviCFBP13507_16785 | Not Available | Positive | 3763586 - 3764194 | 23464.0 |
| transcriptional regulator | PviCFBP13507_16790 | Not Available | Positive | 3764194 - 3764850 | 23748.8 |
| 3-phosphoshikimate 1-carboxyvinyltransferase | PviCFBP13507_16795 | Not Available | Negative | 3764873 - 3766129 | 43619.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
