Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | CFBP13507 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1181068 bp
Thymine Count
1214519 bp
Guanine Count
1761031 bp
Cytosine Count
1725290 bp
Genome Length
5881917 bp
Protein-coding Genes
5114 genes
Non-Coding Genes
83 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf1127 domain-containing protein | PviCFBP13507_16190 | Not Available | Positive | 3630869 - 3631120 | 9869.76 |
| fad-binding oxidoreductase | PviCFBP13507_16195 | Not Available | Negative | 3631127 - 3632440 | 47538.1 |
| ykgj family cysteine cluster protein | PviCFBP13507_16200 | Not Available | Positive | 3632547 - 3632900 | 13144.9 |
| asnc family transcriptional regulator | PviCFBP13507_16205 | Not Available | Negative | 3632910 - 3633398 | 18660.7 |
| d-amino acid dehydrogenase small subunit | PviCFBP13507_16210 | Not Available | Positive | 3633556 - 3634857 | 47101.7 |
| rida family protein | PviCFBP13507_16215 | Not Available | Positive | 3634829 - 3635182 | 12830.5 |
| alanine racemase | PviCFBP13507_16220 | Not Available | Positive | 3635254 - 3636327 | 38683.7 |
| cupin domain-containing protein | PviCFBP13507_16225 | Not Available | Positive | 3636457 - 3637005 | 19951.8 |
| cytochrome c | PviCFBP13507_16230 | Not Available | Positive | 3637189 - 3637611 | 14492.5 |
| protein-methionine-sulfoxide reductase heme-binding subunit msrq | PviCFBP13507_16240 | Not Available | Negative | 3638034 - 3638654 | 23254.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
