Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | CFBP13507 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1181068 bp
Thymine Count
1214519 bp
Guanine Count
1761031 bp
Cytosine Count
1725290 bp
Genome Length
5881917 bp
Protein-coding Genes
5114 genes
Non-Coding Genes
83 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | PviCFBP13507_15835 | Not Available | Positive | 3555033 - 3555617 | 21852.8 |
| cytochrome b | PviCFBP13507_15840 | Not Available | Positive | 3555630 - 3556688 | 37802.1 |
| protoheme ix farnesyltransferase | PviCFBP13507_15845 | Not Available | Positive | 3556685 - 3557584 | 33165.8 |
| sco family protein | PviCFBP13507_15850 | Not Available | Positive | 3557581 - 3558213 | 22869.9 |
| abc transporter substrate-binding protein | PviCFBP13507_15860 | Not Available | Negative | 3558511 - 3559284 | 27815.5 |
| abc transporter permease | PviCFBP13507_15865 | Not Available | Negative | 3559337 - 3560011 | 24251.6 |
| methionine abc transporter atp-binding protein | PviCFBP13507_15870 | Not Available | Negative | 3560011 - 3561018 | 36813.4 |
| catalase hpii | PviCFBP13507_15875 | Not Available | Positive | 3561328 - 3563475 | 78613.6 |
| hypothetical protein | PviCFBP13507_15880 | Not Available | Negative | 3563722 - 3564438 | 25866.3 |
| zinc abc transporter permease subunit znub | PviCFBP13507_15885 | Not Available | Negative | 3564477 - 3565265 | 27381.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
