Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | CFBP13507 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1181068 bp
Thymine Count
1214519 bp
Guanine Count
1761031 bp
Cytosine Count
1725290 bp
Genome Length
5881917 bp
Protein-coding Genes
5114 genes
Non-Coding Genes
83 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sua5/ycio/yrdc/ywlc family protein | PviCFBP13507_15635 | Not Available | Positive | 3518938 - 3519495 | 20576.8 |
| quinone oxidoreductase | PviCFBP13507_15640 | Not Available | Negative | 3519520 - 3520497 | 34435.3 |
| oxygen-dependent coproporphyrinogen oxidase | PviCFBP13507_15645 | Not Available | Positive | 3520666 - 3521580 | 34618.4 |
| shikimate dehydrogenase | PviCFBP13507_15650 | Not Available | Positive | 3521822 - 3522643 | 29356.9 |
| sulp family inorganic anion transporter | PviCFBP13507_15655 | Not Available | Negative | 3522674 - 3524242 | 56409.0 |
| hypothetical protein | PviCFBP13507_15660 | Not Available | Negative | 3524660 - 3524977 | 11033.4 |
| choline abc transporter substrate-binding protein | PviCFBP13507_15665 | Not Available | Negative | 3525135 - 3526061 | 33402.2 |
| choline-sulfatase | PviCFBP13507_15670 | Not Available | Negative | 3526100 - 3527605 | 57036.0 |
| lysr family transcriptional regulator | PviCFBP13507_15675 | Not Available | Positive | 3527720 - 3528670 | 35293.3 |
| 2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase | PviCFBP13507_15680 | Not Available | Positive | 3528960 - 3529784 | 30088.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
