Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | CFBP13507 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1181068 bp
Thymine Count
1214519 bp
Guanine Count
1761031 bp
Cytosine Count
1725290 bp
Genome Length
5881917 bp
Protein-coding Genes
5114 genes
Non-Coding Genes
83 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycine--trna ligase subunit beta | PviCFBP13507_15585 | Not Available | Negative | 3507473 - 3509527 | 75009.0 |
| glycine--trna ligase subunit alpha | PviCFBP13507_15590 | Not Available | Negative | 3509524 - 3510471 | 35976.6 |
| dna-3-methyladenine glycosylase i | PviCFBP13507_15595 | Not Available | Positive | 3510551 - 3511102 | 21095.7 |
| lysophospholipid acyltransferase | PviCFBP13507_15600 | Not Available | Positive | 3511139 - 3512026 | 32753.3 |
| trk system potassium transporter trka | PviCFBP13507_15605 | Not Available | Negative | 3512274 - 3513647 | 49810.2 |
| 16s rrna (cytosine(967)-c(5))-methyltransferase | PviCFBP13507_15610 | Not Available | Negative | 3513694 - 3515004 | 47465.3 |
| methionyl-trna formyltransferase | PviCFBP13507_15615 | Not Available | Negative | 3515001 - 3515945 | 33465.6 |
| peptide deformylase | PviCFBP13507_15620 | Not Available | Negative | 3516009 - 3516515 | 19197.2 |
| peptidoglycan-binding protein | PviCFBP13507_15625 | Not Available | Positive | 3516639 - 3517664 | 37536.9 |
| dna-protecting protein dpra | PviCFBP13507_15630 | Not Available | Positive | 3517788 - 3518900 | 38746.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
