Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | CFBP13507 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1181068 bp
Thymine Count
1214519 bp
Guanine Count
1761031 bp
Cytosine Count
1725290 bp
Genome Length
5881917 bp
Protein-coding Genes
5114 genes
Non-Coding Genes
83 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| alanine:cation symporter family protein | PviCFBP13507_15070 | Not Available | Positive | 3394642 - 3396093 | 51849.3 |
| asparaginase | PviCFBP13507_15075 | Not Available | Positive | 3396121 - 3397125 | 35148.4 |
| effector protein | PviCFBP13507_15080 | Not Available | Negative | 3397193 - 3398083 | 33317.6 |
| hypothetical protein | PviCFBP13507_15085 | Not Available | Negative | 3398209 - 3399420 | 41907.0 |
| plp-dependent aminotransferase family protein | PviCFBP13507_15090 | Not Available | Negative | 3399474 - 3401036 | 56475.7 |
| transcriptional regulator | PviCFBP13507_15095 | Not Available | Positive | 3401127 - 3401765 | 23784.1 |
| gnat family n-acetyltransferase | PviCFBP13507_15100 | Not Available | Positive | 3401765 - 3402211 | 17136.3 |
| n-acetyltransferase | PviCFBP13507_15105 | Not Available | Positive | 3402224 - 3402895 | 25370.9 |
| oxaloacetate decarboxylase subunit alpha | PviCFBP13507_15115 | Not Available | Negative | 3403255 - 3405063 | 65781.3 |
| acetyl-coa carboxylase biotin carboxylase subunit | PviCFBP13507_15120 | Not Available | Negative | 3405074 - 3406489 | 51958.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
