Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | CFBP13507 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1181068 bp
Thymine Count
1214519 bp
Guanine Count
1761031 bp
Cytosine Count
1725290 bp
Genome Length
5881917 bp
Protein-coding Genes
5114 genes
Non-Coding Genes
83 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| helicase | PviCFBP13507_14920 | Not Available | Negative | 3360451 - 3360828 | 14168.5 |
| hypothetical protein | PviCFBP13507_14925 | Not Available | Negative | 3360984 - 3361424 | 14968.9 |
| hu family dna-binding protein | PviCFBP13507_14930 | Not Available | Negative | 3361693 - 3361992 | 10695.0 |
| hypothetical protein | PviCFBP13507_14935 | Not Available | Positive | 3361993 - 3362253 | 9258.26 |
| fad-dependent oxidoreductase | PviCFBP13507_14940 | Not Available | Negative | 3362181 - 3363329 | 40177.9 |
| rubredoxin | PviCFBP13507_14945 | Not Available | Negative | 3363353 - 3363520 | 6190.39 |
| chorismate lyase | PviCFBP13507_14950 | Not Available | Positive | 3363707 - 3364267 | 20680.7 |
| 4-hydroxybenzoate octaprenyltransferase | PviCFBP13507_14955 | Not Available | Positive | 3364267 - 3365157 | 32906.6 |
| hypothetical protein | PviCFBP13507_14960 | Not Available | Negative | 3365178 - 3365555 | 13256.5 |
| phosphate regulon transcriptional regulatory protein phob | PviCFBP13507_14965 | Not Available | Positive | 3365718 - 3366407 | 25612.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
