Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | CFBP13507 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1181068 bp
Thymine Count
1214519 bp
Guanine Count
1761031 bp
Cytosine Count
1725290 bp
Genome Length
5881917 bp
Protein-coding Genes
5114 genes
Non-Coding Genes
83 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dimethylglycine demethylation protein dgcb | PviCFBP13507_14815 | Not Available | Positive | 3336832 - 3338796 | 71307.0 |
| electron transfer flavoprotein subunit alpha | PviCFBP13507_14820 | Not Available | Positive | 3338796 - 3340016 | 43338.9 |
| electron transfer flavoprotein subunit beta | PviCFBP13507_14825 | Not Available | Positive | 3340006 - 3340812 | 28187.1 |
| glycine-betaine demethylase subunit gbca | PviCFBP13507_14830 | Not Available | Negative | 3341502 - 3342800 | 49068.6 |
| glycine-betaine demethylase subunit gbcb | PviCFBP13507_14840 | Not Available | Positive | 3343112 - 3344212 | 40510.6 |
| low specificity l-threonine aldolase | PviCFBP13507_14845 | Not Available | Negative | 3344232 - 3345272 | 38038.9 |
| conjugal transfer protein trax | PviCFBP13507_14850 | Not Available | Positive | 3345369 - 3346115 | 27817.4 |
| alanine transaminase | PviCFBP13507_14855 | Not Available | Positive | 3346279 - 3347496 | 45063.6 |
| coa transferase | PviCFBP13507_14860 | Not Available | Negative | 3348074 - 3349294 | 43516.1 |
| acyl-coa dehydrogenase | PviCFBP13507_14865 | Not Available | Negative | 3349307 - 3350488 | 43192.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
