Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | CFBP13507 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1181068 bp
Thymine Count
1214519 bp
Guanine Count
1761031 bp
Cytosine Count
1725290 bp
Genome Length
5881917 bp
Protein-coding Genes
5114 genes
Non-Coding Genes
83 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cytochrome b | PviCFBP13507_14565 | Not Available | Positive | 3283600 - 3284148 | 20107.1 |
| ycei family protein | PviCFBP13507_14570 | Not Available | Positive | 3284176 - 3284754 | 20575.3 |
| hypothetical protein | PviCFBP13507_14575 | Not Available | Positive | 3284921 - 3285166 | 9207.55 |
| dead/deah box helicase | PviCFBP13507_14580 | Not Available | Negative | 3285103 - 3287007 | 68418.4 |
| methylenetetrahydrofolate reductase | PviCFBP13507_14585 | Not Available | Negative | 3287319 - 3288164 | 31423.2 |
| adenosylhomocysteinase | PviCFBP13507_14590 | Not Available | Negative | 3288360 - 3289769 | 51366.8 |
| acyl-coa thioesterase | PviCFBP13507_14595 | Not Available | Positive | 3290181 - 3290576 | 14869.9 |
| hydroxypyruvate isomerase | PviCFBP13507_14600 | Not Available | Negative | 3290751 - 3291533 | 29057.4 |
| transporter | PviCFBP13507_14605 | Not Available | Negative | 3291556 - 3293013 | 50390.0 |
| aldolase | PviCFBP13507_14610 | Not Available | Negative | 3293176 - 3293814 | 23269.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
