Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | CFBP13507 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1181068 bp
Thymine Count
1214519 bp
Guanine Count
1761031 bp
Cytosine Count
1725290 bp
Genome Length
5881917 bp
Protein-coding Genes
5114 genes
Non-Coding Genes
83 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| amidase | PviCFBP13507_14305 | Not Available | Negative | 3233890 - 3235296 | 50932.9 |
| aspartate aminotransferase family protein | PviCFBP13507_14310 | Not Available | Negative | 3235289 - 3236638 | 49762.2 |
| acetylornithine aminotransferase | PviCFBP13507_14315 | Not Available | Negative | 3236616 - 3237740 | 40088.1 |
| taurine catabolism dioxygenase taud | PviCFBP13507_14320 | Not Available | Negative | 3237749 - 3238630 | 32844.6 |
| amp-dependent synthetase | PviCFBP13507_14325 | Not Available | Negative | 3238605 - 3240173 | 57168.6 |
| thermostable hemolysin | PviCFBP13507_14330 | Not Available | Negative | 3240170 - 3240781 | 22963.8 |
| lysr family transcriptional regulator | PviCFBP13507_14335 | Not Available | Positive | 3240934 - 3241866 | 34615.6 |
| rna polymerase subunit sigma-70 | PviCFBP13507_14340 | Not Available | Negative | 3242035 - 3242739 | 25753.0 |
| rna polymerase subunit sigma | PviCFBP13507_14345 | Not Available | Negative | 3242736 - 3243302 | 21456.2 |
| duf3455 domain-containing protein | PviCFBP13507_14350 | Not Available | Negative | 3243402 - 3243935 | 18491.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
