Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | CFBP13507 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1181068 bp
Thymine Count
1214519 bp
Guanine Count
1761031 bp
Cytosine Count
1725290 bp
Genome Length
5881917 bp
Protein-coding Genes
5114 genes
Non-Coding Genes
83 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| iron abc transporter substrate-binding protein | PviCFBP13507_13785 | Not Available | Positive | 3118647 - 3119648 | 36548.5 |
| iron abc transporter permease | PviCFBP13507_13790 | Not Available | Positive | 3119894 - 3121510 | 58623.6 |
| glycine cleavage system aminomethyltransferase gcvt | PviCFBP13507_13795 | Not Available | Positive | 3121665 - 3122747 | 39587.6 |
| glycine cleavage system protein gcvh | PviCFBP13507_13800 | Not Available | Positive | 3122795 - 3123181 | 13357.4 |
| duf2388 domain-containing protein | PviCFBP13507_13805 | Not Available | Negative | 3123234 - 3123554 | 11257.5 |
| type ii secretion system protein e | PviCFBP13507_13810 | Not Available | Negative | 3123696 - 3125480 | 66024.7 |
| hypothetical protein | PviCFBP13507_13815 | Not Available | Negative | 3125591 - 3125938 | 12618.2 |
| lrp/asnc family transcriptional regulator | PviCFBP13507_13820 | Not Available | Positive | 3126066 - 3126533 | 17578.2 |
| inorganic triphosphatase | PviCFBP13507_13825 | Not Available | Negative | 3126699 - 3128066 | 51868.7 |
| acetylornithine deacetylase | PviCFBP13507_13830 | Not Available | Positive | 3128229 - 3129377 | 41352.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
