Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | CFBP13507 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1181068 bp
Thymine Count
1214519 bp
Guanine Count
1761031 bp
Cytosine Count
1725290 bp
Genome Length
5881917 bp
Protein-coding Genes
5114 genes
Non-Coding Genes
83 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| isoprenoid biosynthesis protein elbb | PviCFBP13507_13625 | Not Available | Negative | 3088703 - 3089371 | 23450.1 |
| deda family protein | PviCFBP13507_13630 | Not Available | Negative | 3089526 - 3090185 | 24579.4 |
| porphobilinogen synthase | PviCFBP13507_13635 | Not Available | Positive | 3090416 - 3091426 | 36861.1 |
| polyphosphate kinase 1 | PviCFBP13507_13640 | Not Available | Positive | 3091443 - 3093653 | 82721.2 |
| exopolyphosphatase | PviCFBP13507_13645 | Not Available | Negative | 3093640 - 3095142 | 56254.8 |
| amino acid abc transporter atp-binding protein | PviCFBP13507_13650 | Not Available | Negative | 3095364 - 3096098 | 26792.7 |
| amino acid abc transporter permease | PviCFBP13507_13655 | Not Available | Negative | 3096085 - 3096732 | 23401.2 |
| amino acid abc transporter permease | PviCFBP13507_13660 | Not Available | Negative | 3096732 - 3097397 | 24670.8 |
| amino acid abc transporter substrate-binding protein | PviCFBP13507_13665 | Not Available | Negative | 3097428 - 3098213 | 27887.8 |
| fadr family transcriptional regulator | PviCFBP13507_13670 | Not Available | Positive | 3098465 - 3099169 | 25463.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
