Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | CFBP13507 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1181068 bp
Thymine Count
1214519 bp
Guanine Count
1761031 bp
Cytosine Count
1725290 bp
Genome Length
5881917 bp
Protein-coding Genes
5114 genes
Non-Coding Genes
83 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | PviCFBP13507_12795 | Not Available | Positive | 2920049 - 2922994 | 105258.0 |
| hypothetical protein | PviCFBP13507_12800 | Not Available | Positive | 2923098 - 2923556 | 17417.0 |
| esterase | PviCFBP13507_12805 | Not Available | Negative | 2923558 - 2924238 | 24875.8 |
| cytochrome-c oxidase, cbb3-type subunit i | PviCFBP13507_12810 | Not Available | Positive | 2924516 - 2925958 | 53628.9 |
| cytochrome-c oxidase, cbb3-type subunit ii | PviCFBP13507_12815 | Not Available | Positive | 2925958 - 2926566 | 22345.0 |
| ccoq/fixq family cbb3-type cytochrome c oxidase assembly chaperone | PviCFBP13507_12820 | Not Available | Positive | 2926572 - 2926763 | 6799.26 |
| cytochrome-c oxidase, cbb3-type subunit iii | PviCFBP13507_12825 | Not Available | Positive | 2926760 - 2927737 | 35539.2 |
| type ii toxin-antitoxin system phd/yefm family antitoxin | PviCFBP13507_12830 | Not Available | Positive | 2927874 - 2928119 | 8695.35 |
| type ii toxin-antitoxin system vapc family toxin | PviCFBP13507_12835 | Not Available | Positive | 2928119 - 2928571 | 16631.1 |
| cytochrome c oxidase accessory protein ccog | PviCFBP13507_12840 | Not Available | Positive | 2928596 - 2930011 | 53439.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
