Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | CFBP13507 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1181068 bp
Thymine Count
1214519 bp
Guanine Count
1761031 bp
Cytosine Count
1725290 bp
Genome Length
5881917 bp
Protein-coding Genes
5114 genes
Non-Coding Genes
83 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type iii secretion protein | PviCFBP13507_01100 | Not Available | Positive | 255830 - 256441 | 22348.6 |
| hypothetical protein | PviCFBP13507_01105 | Not Available | Positive | 256460 - 256678 | 7738.65 |
| hypothetical protein | PviCFBP13507_01110 | Not Available | Positive | 256688 - 257119 | 14713.2 |
| escj/yscj/hrcj family type iii secretion inner membrane ring protein | PviCFBP13507_01115 | Not Available | Positive | 257123 - 257902 | 27839.1 |
| type iii secretion protein | PviCFBP13507_01120 | Not Available | Positive | 257899 - 258528 | 23309.9 |
| hrpe/yscl family type iii secretion apparatus protein | PviCFBP13507_01125 | Not Available | Positive | 258521 - 259117 | 21841.5 |
| flii/yscn family atpase | PviCFBP13507_01130 | Not Available | Positive | 259110 - 260438 | 47348.3 |
| hypothetical protein | PviCFBP13507_01135 | Not Available | Positive | 260488 - 261000 | 19462.4 |
| yscq/hrcq family type iii secretion apparatus protein | PviCFBP13507_01140 | Not Available | Positive | 260997 - 262040 | 37795.5 |
| escr/yscr/hrcr family type iii secretion system export apparatus protein | PviCFBP13507_01145 | Not Available | Positive | 262037 - 262693 | 24020.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
