Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | CFBP13507 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1181068 bp
Thymine Count
1214519 bp
Guanine Count
1761031 bp
Cytosine Count
1725290 bp
Genome Length
5881917 bp
Protein-coding Genes
5114 genes
Non-Coding Genes
83 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| trna dihydrouridine(20/20a) synthase dusa | PviCFBP13507_12295 | Not Available | Negative | 2817893 - 2818903 | 37359.1 |
| helix-turn-helix domain-containing protein | PviCFBP13507_12300 | Not Available | Negative | 2819411 - 2819749 | 12390.0 |
| transcriptional regulator | PviCFBP13507_12305 | Not Available | Negative | 2819736 - 2820056 | 11613.0 |
| rhs repeat-associated core domain-containing protein | PviCFBP13507_12310 | Not Available | Negative | 2820515 - 2821615 | 41230.1 |
| rula protein | PviCFBP13507_12315 | Not Available | Negative | 2821795 - 2822205 | 14899.9 |
| glutamate carboxypeptidase | PviCFBP13507_12320 | Not Available | Negative | 2822303 - 2823544 | 43821.3 |
| tonb-dependent siderophore receptor | PviCFBP13507_12325 | Not Available | Positive | 2823810 - 2825981 | 79312.9 |
| cell division protein zipa | PviCFBP13507_12330 | Not Available | Negative | 2826056 - 2826535 | 17629.1 |
| transaldolase | PviCFBP13507_12335 | Not Available | Positive | 2826782 - 2827717 | 33949.1 |
| anti-sigma factor antagonist | PviCFBP13507_12340 | Not Available | Negative | 2827796 - 2828281 | 17899.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
