Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | CFBP13507 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1181068 bp
Thymine Count
1214519 bp
Guanine Count
1761031 bp
Cytosine Count
1725290 bp
Genome Length
5881917 bp
Protein-coding Genes
5114 genes
Non-Coding Genes
83 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| diaminobutyrate--2-oxoglutarate transaminase | PviCFBP13507_12245 | Not Available | Negative | 2795550 - 2796962 | 50558.5 |
| non-ribosomal peptide synthetase | PviCFBP13507_12250 | Not Available | Negative | 2797145 - 2810164 | 481431.0 |
| thioesterase | PviCFBP13507_12255 | Not Available | Negative | 2810259 - 2811017 | 28158.9 |
| rna polymerase factor sigma-70 | PviCFBP13507_12260 | Not Available | Positive | 2811341 - 2811877 | 20140.4 |
| sgcj/ecac family oxidoreductase | PviCFBP13507_12265 | Not Available | Negative | 2811947 - 2812474 | 19530.3 |
| sensor histidine kinase | PviCFBP13507_12270 | Not Available | Positive | 2812673 - 2813857 | 43039.7 |
| dna-binding response regulator | PviCFBP13507_12275 | Not Available | Positive | 2813854 - 2814522 | 23669.5 |
| histidine kinase | PviCFBP13507_12280 | Not Available | Positive | 2814606 - 2816846 | 82492.8 |
| response regulator | PviCFBP13507_12285 | Not Available | Positive | 2816843 - 2817307 | 17778.7 |
| universal stress protein | PviCFBP13507_12290 | Not Available | Negative | 2817316 - 2817747 | 15209.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
