Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | CFBP13507 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1181068 bp
Thymine Count
1214519 bp
Guanine Count
1761031 bp
Cytosine Count
1725290 bp
Genome Length
5881917 bp
Protein-coding Genes
5114 genes
Non-Coding Genes
83 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 3-isopropylmalate dehydratase small subunit | PviCFBP13507_12040 | Not Available | Negative | 2725094 - 2725735 | 24166.5 |
| 3-isopropylmalate dehydratase large subunit | PviCFBP13507_12045 | Not Available | Negative | 2725746 - 2727170 | 51061.2 |
| lysr family transcriptional regulator | PviCFBP13507_12050 | Not Available | Positive | 2727315 - 2728172 | 31548.4 |
| diguanylate cyclase | PviCFBP13507_12055 | Not Available | Positive | 2728265 - 2730463 | 81549.8 |
| heat-shock protein | PviCFBP13507_12060 | Not Available | Negative | 2730507 - 2730950 | 16601.5 |
| pp_02388 | PviCFBP13507_12065 | Not Available | Negative | 2731052 - 2732032 | Not Available |
| acyl-coa thioesterase | PviCFBP13507_12070 | Not Available | Negative | 2732062 - 2732523 | 17509.8 |
| Trna-glu | Not Available | Not Available | Positive | 2732702 - 2732777 | Not Available |
| Trna-ala | Not Available | Not Available | Positive | 2732823 - 2732898 | Not Available |
| Trna-glu | Not Available | Not Available | Positive | 2732951 - 2733026 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
