Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | CFBP13507 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1181068 bp
Thymine Count
1214519 bp
Guanine Count
1761031 bp
Cytosine Count
1725290 bp
Genome Length
5881917 bp
Protein-coding Genes
5114 genes
Non-Coding Genes
83 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sel1 repeat family protein | PviCFBP13507_11685 | Not Available | Negative | 2641612 - 2642160 | 19659.5 |
| glutamate-1-semialdehyde-2,1-aminomutase | PviCFBP13507_11690 | Not Available | Negative | 2642469 - 2643752 | 45444.6 |
| adenosine deaminase | PviCFBP13507_11695 | Not Available | Positive | 2643949 - 2645394 | 53015.1 |
| methylated-dna--[protein]-cysteine s-methyltransferase | PviCFBP13507_11700 | Not Available | Positive | 2645391 - 2645912 | 18974.2 |
| thiamine phosphate synthase | PviCFBP13507_11705 | Not Available | Negative | 2646087 - 2646716 | 22564.2 |
| bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | PviCFBP13507_11710 | Not Available | Negative | 2646740 - 2647537 | 28335.1 |
| hybrid sensor histidine kinase/response regulator | PviCFBP13507_11715 | Not Available | Positive | 2647896 - 2649890 | 74498.8 |
| dna alkylation response protein | PviCFBP13507_11720 | Not Available | Positive | 2650008 - 2651657 | 59761.6 |
| amp nucleosidase | PviCFBP13507_11725 | Not Available | Positive | 2651710 - 2653173 | 54662.6 |
| pseudouridine synthase | PviCFBP13507_11730 | Not Available | Positive | 2653241 - 2653873 | 23925.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
