Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | CFBP13507 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1181068 bp
Thymine Count
1214519 bp
Guanine Count
1761031 bp
Cytosine Count
1725290 bp
Genome Length
5881917 bp
Protein-coding Genes
5114 genes
Non-Coding Genes
83 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| l-arabinose abc transporter atp-binding protein arag | PviCFBP13507_00950 | Not Available | Positive | 221748 - 223271 | 55291.3 |
| l-arabinose abc transporter permease arah | PviCFBP13507_00955 | Not Available | Positive | 223289 - 224278 | 35006.1 |
| hypothetical protein | PviCFBP13507_00960 | Not Available | Positive | 224753 - 224989 | 8467.11 |
| ggdef domain-containing protein | PviCFBP13507_00965 | Not Available | Positive | 225017 - 226300 | 47407.8 |
| sensor histidine kinase | PviCFBP13507_00970 | Not Available | Negative | 226317 - 227642 | 48898.2 |
| dna-binding response regulator | PviCFBP13507_00975 | Not Available | Negative | 227639 - 228340 | 26000.7 |
| mipa/ompv family protein | PviCFBP13507_00980 | Not Available | Negative | 228389 - 229123 | 26501.9 |
| tetr/acrr family transcriptional regulator | PviCFBP13507_00985 | Not Available | Negative | 229269 - 229907 | 23346.3 |
| nitroreductase | PviCFBP13507_00990 | Not Available | Positive | 230003 - 230731 | 26076.6 |
| oprm | PviCFBP13507_00995 | Not Available | Positive | 230923 - 232335 | 49520.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
