Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | CFBP13507 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1181068 bp
Thymine Count
1214519 bp
Guanine Count
1761031 bp
Cytosine Count
1725290 bp
Genome Length
5881917 bp
Protein-coding Genes
5114 genes
Non-Coding Genes
83 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| poly(hydroxyalkanoate) granule-associated protein | PviCFBP13507_10395 | Not Available | Positive | 2343077 - 2343862 | 27062.2 |
| hypothetical protein | PviCFBP13507_10400 | Not Available | Positive | 2344472 - 2345155 | 24732.7 |
| hypothetical protein | PviCFBP13507_10405 | Not Available | Positive | 2345152 - 2345664 | 18867.5 |
| abc transporter | PviCFBP13507_10410 | Not Available | Positive | 2345677 - 2347353 | 61258.0 |
| tetr family transcriptional regulator | PviCFBP13507_10415 | Not Available | Negative | 2347420 - 2348034 | 23264.5 |
| class ii poly(r)-hydroxyalkanoic acid synthase | PviCFBP13507_10420 | Not Available | Negative | 2348115 - 2349800 | 63076.1 |
| poly(3-hydroxyalkanoate) depolymerase | PviCFBP13507_10425 | Not Available | Negative | 2349965 - 2350822 | 31657.8 |
| class ii poly(r)-hydroxyalkanoic acid synthase | PviCFBP13507_10430 | Not Available | Negative | 2350955 - 2352634 | 62644.7 |
| duf971 domain-containing protein | PviCFBP13507_10435 | Not Available | Negative | 2353006 - 2353383 | 13936.7 |
| hslu--hslv peptidase atpase subunit | PviCFBP13507_10440 | Not Available | Negative | 2353458 - 2354795 | 49805.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
