Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | CFBP13507 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1181068 bp
Thymine Count
1214519 bp
Guanine Count
1761031 bp
Cytosine Count
1725290 bp
Genome Length
5881917 bp
Protein-coding Genes
5114 genes
Non-Coding Genes
83 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| twin-arginine translocase subunit tatc | PviCFBP13507_10345 | Not Available | Negative | 2336607 - 2337407 | 29827.3 |
| twin-arginine translocase subunit tatb | PviCFBP13507_10350 | Not Available | Negative | 2337404 - 2337859 | 16432.7 |
| twin-arginine translocase tata/tate family subunit | PviCFBP13507_10355 | Not Available | Negative | 2337864 - 2338157 | 10788.8 |
| phosphoribosyl-atp pyrophosphatase | PviCFBP13507_10360 | Not Available | Negative | 2338205 - 2338537 | 11909.0 |
| phosphoribosyl-amp cyclohydrolase | PviCFBP13507_10365 | Not Available | Negative | 2338540 - 2338932 | 14920.8 |
| ubiquinone biosynthesis regulatory protein kinase ubib | PviCFBP13507_10370 | Not Available | Negative | 2339000 - 2340619 | 62120.9 |
| scp2 domain-containing protein | PviCFBP13507_10375 | Not Available | Negative | 2340616 - 2341239 | 22849.2 |
| bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase ubie | PviCFBP13507_10380 | Not Available | Negative | 2341239 - 2342009 | 28454.4 |
| polyhydroxyalkanoic acid system protein | PviCFBP13507_10385 | Not Available | Positive | 2342154 - 2342432 | 10230.3 |
| poly(3-hydroxyalkanoate) granule-associated protein phai | PviCFBP13507_10390 | Not Available | Positive | 2342593 - 2343066 | 17555.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
