Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | CFBP13507 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1181068 bp
Thymine Count
1214519 bp
Guanine Count
1761031 bp
Cytosine Count
1725290 bp
Genome Length
5881917 bp
Protein-coding Genes
5114 genes
Non-Coding Genes
83 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 3-dehydroquinate synthase | PviCFBP13507_10245 | Not Available | Positive | 2304547 - 2305650 | 39978.5 |
| cell division protein | PviCFBP13507_10250 | Not Available | Positive | 2305660 - 2307288 | 56133.6 |
| glutamate synthase large subunit | PviCFBP13507_10260 | Not Available | Positive | 2307648 - 2312093 | 162514.0 |
| Tmrna,resume consensus sequence (at 81): gccaaccgccagcgatgc | Not Available | Not Available | Positive | 2309350 - 2309620 | Not Available |
| glutamate synthase small subunit | PviCFBP13507_10265 | Not Available | Positive | 2312215 - 2313633 | 51777.0 |
| uroporphyrinogen decarboxylase | PviCFBP13507_10270 | Not Available | Positive | 2313789 - 2314856 | 38808.6 |
| lipocalin | PviCFBP13507_10275 | Not Available | Negative | 2314916 - 2315494 | 21876.0 |
| outer membrane protein assembly factor bame | PviCFBP13507_10280 | Not Available | Negative | 2315497 - 2315751 | 8920.81 |
| duf924 domain-containing protein | PviCFBP13507_10285 | Not Available | Negative | 2315886 - 2316488 | 23086.6 |
| class 1 fructose-bisphosphatase | PviCFBP13507_10290 | Not Available | Negative | 2316503 - 2317513 | 37245.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
