Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | CFBP13507 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1181068 bp
Thymine Count
1214519 bp
Guanine Count
1761031 bp
Cytosine Count
1725290 bp
Genome Length
5881917 bp
Protein-coding Genes
5114 genes
Non-Coding Genes
83 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| trna 4-thiouridine(8) synthase thii | PviCFBP13507_10195 | Not Available | Positive | 2291290 - 2292744 | 54342.1 |
| translational gtpase typa | PviCFBP13507_10200 | Not Available | Positive | 2292888 - 2294708 | 67079.6 |
| ykgj family cysteine cluster protein | PviCFBP13507_10205 | Not Available | Negative | 2295049 - 2295504 | 17106.8 |
| peptidase | PviCFBP13507_10210 | Not Available | Negative | 2296314 - 2298758 | 89570.4 |
| pilus assembly protein pilm | PviCFBP13507_10215 | Not Available | Positive | 2298965 - 2300029 | 38033.7 |
| pilus assembly protein piln | PviCFBP13507_10220 | Not Available | Positive | 2300029 - 2300607 | 21776.7 |
| pilus assembly protein pilp | PviCFBP13507_10225 | Not Available | Positive | 2300604 - 2301227 | 23092.0 |
| pilus assembly protein pilp | PviCFBP13507_10230 | Not Available | Positive | 2301224 - 2301751 | 18884.5 |
| type iv pilus secretin pilq | PviCFBP13507_10235 | Not Available | Positive | 2301748 - 2303898 | 77440.7 |
| shikimate kinase arok | PviCFBP13507_10240 | Not Available | Positive | 2303903 - 2304421 | 19054.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
