Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | CFBP13507 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1181068 bp
Thymine Count
1214519 bp
Guanine Count
1761031 bp
Cytosine Count
1725290 bp
Genome Length
5881917 bp
Protein-coding Genes
5114 genes
Non-Coding Genes
83 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| heme abc transporter atp-binding protein ccma | PviCFBP13507_09880 | Not Available | Positive | 2223125 - 2223766 | 23053.0 |
| heme exporter protein ccmb | PviCFBP13507_09885 | Not Available | Positive | 2223763 - 2224434 | 23239.8 |
| heme abc transporter permease | PviCFBP13507_09890 | Not Available | Positive | 2224490 - 2225284 | 29352.7 |
| heme exporter protein ccmd | PviCFBP13507_09895 | Not Available | Positive | 2225281 - 2225457 | 6774.43 |
| cytochrome c maturation protein ccme | PviCFBP13507_09900 | Not Available | Positive | 2225454 - 2225924 | 16763.2 |
| heme lyase nrfefg subunit nrfe | PviCFBP13507_09905 | Not Available | Positive | 2225924 - 2227897 | 71545.7 |
| dsbe family thiol:disulfide interchange protein | PviCFBP13507_09910 | Not Available | Positive | 2227894 - 2228430 | 20160.5 |
| cytochrome c-type biogenesis protein ccmh | PviCFBP13507_09915 | Not Available | Positive | 2228427 - 2228903 | 17911.7 |
| c-type cytochrome biogenesis protein ccmi | PviCFBP13507_09920 | Not Available | Positive | 2228900 - 2230093 | 43075.7 |
| hypothetical protein | PviCFBP13507_09925 | Not Available | Positive | 2230121 - 2230528 | 14423.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
