Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | CFBP13507 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1181068 bp
Thymine Count
1214519 bp
Guanine Count
1761031 bp
Cytosine Count
1725290 bp
Genome Length
5881917 bp
Protein-coding Genes
5114 genes
Non-Coding Genes
83 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| bifunctional succinylornithine transaminase/acetylornithine transaminase | PviCFBP13507_09725 | Not Available | Positive | 2182661 - 2183878 | 43332.0 |
| arginine/ornithine succinyltransferase subunit alpha | PviCFBP13507_09730 | Not Available | Positive | 2184012 - 2185055 | 37697.5 |
| arginine n-succinyltransferase | PviCFBP13507_09735 | Not Available | Positive | 2185119 - 2186144 | 37520.0 |
| succinylglutamate-semialdehyde dehydrogenase | PviCFBP13507_09740 | Not Available | Positive | 2186144 - 2187610 | 51786.6 |
| n-succinylarginine dihydrolase | PviCFBP13507_09745 | Not Available | Positive | 2187659 - 2189005 | 49047.0 |
| topoisomerase ii | PviCFBP13507_09750 | Not Available | Positive | 2189065 - 2189352 | 10487.2 |
| succinylglutamate desuccinylase | PviCFBP13507_09755 | Not Available | Positive | 2189374 - 2190387 | 37607.2 |
| guanine deaminase | PviCFBP13507_09760 | Not Available | Negative | 2190583 - 2191896 | 48301.6 |
| xanthine dehydrogenase accessory protein xdhc | PviCFBP13507_09765 | Not Available | Negative | 2191904 - 2192743 | 30386.9 |
| xanthine dehydrogenase molybdopterin binding subunit | PviCFBP13507_09770 | Not Available | Negative | 2192892 - 2195261 | 86375.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
