Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | CFBP13507 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1181068 bp
Thymine Count
1214519 bp
Guanine Count
1761031 bp
Cytosine Count
1725290 bp
Genome Length
5881917 bp
Protein-coding Genes
5114 genes
Non-Coding Genes
83 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| zinc ribbon domain-containing protein | PviCFBP13507_09525 | Not Available | Positive | 2142438 - 2142785 | 12315.8 |
| hypothetical protein | PviCFBP13507_09530 | Not Available | Negative | 2142829 - 2143080 | 9148.05 |
| sensory protein tspo | PviCFBP13507_09535 | Not Available | Positive | 2143160 - 2143600 | 16297.6 |
| glutathione s-transferase | PviCFBP13507_09540 | Not Available | Negative | 2143653 - 2144279 | 23277.0 |
| hybrid sensor histidine kinase/response regulator | PviCFBP13507_09545 | Not Available | Negative | 2144432 - 2146948 | 92431.1 |
| methyl-accepting chemotaxis protein | PviCFBP13507_09550 | Not Available | Positive | 2147281 - 2149209 | 68012.0 |
| eama family transporter | PviCFBP13507_09555 | Not Available | Negative | 2149506 - 2150447 | 33464.1 |
| lysr family transcriptional regulator | PviCFBP13507_09560 | Not Available | Positive | 2150522 - 2151376 | 30880.5 |
| hybrid sensor histidine kinase/response regulator | PviCFBP13507_09565 | Not Available | Negative | 2151389 - 2153563 | 79143.8 |
| aminocyclopropane-1-carboxylate deaminase/d-cysteine desulfhydrase family protein | PviCFBP13507_09570 | Not Available | Negative | 2153804 - 2154820 | 36867.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
