Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | CFBP13507 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1181068 bp
Thymine Count
1214519 bp
Guanine Count
1761031 bp
Cytosine Count
1725290 bp
Genome Length
5881917 bp
Protein-coding Genes
5114 genes
Non-Coding Genes
83 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type ii secretion system protein m | PviCFBP13507_00650 | Not Available | Positive | 155496 - 156065 | 20965.0 |
| type ii secretion system protein gspd | PviCFBP13507_00655 | Not Available | Positive | 156062 - 158419 | 82474.0 |
| Ncrna_class:rnase_p_rna | Not Available | Not Available | Positive | 157286 - 157643 | Not Available |
| type ii secretion system protein gspe | PviCFBP13507_00660 | Not Available | Positive | 158416 - 159834 | 51302.9 |
| type ii secretion system protein gspf | PviCFBP13507_00665 | Not Available | Positive | 159834 - 161045 | 43448.4 |
| pectate lyase | PviCFBP13507_00670 | Not Available | Negative | 161107 - 162246 | 40677.4 |
| histidine kinase | PviCFBP13507_00675 | Not Available | Negative | 162875 - 164191 | 47568.3 |
| duf1348 domain-containing protein | PviCFBP13507_00680 | Not Available | Positive | 164341 - 164820 | 18851.8 |
| arac family transcriptional regulator | PviCFBP13507_00685 | Not Available | Positive | 164909 - 165892 | 36517.9 |
| sugar porter family mfs transporter | PviCFBP13507_00690 | Not Available | Negative | 165958 - 167379 | 50853.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
