Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | CFBP13507 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1181068 bp
Thymine Count
1214519 bp
Guanine Count
1761031 bp
Cytosine Count
1725290 bp
Genome Length
5881917 bp
Protein-coding Genes
5114 genes
Non-Coding Genes
83 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| atp-dependent dna ligase | PviCFBP13507_07895 | Not Available | Negative | 1747867 - 1749570 | 63719.1 |
| ligase-associated dna damage response exonuclease | PviCFBP13507_07900 | Not Available | Negative | 1749567 - 1750610 | 38328.0 |
| penicillin acylase family protein | PviCFBP13507_07905 | Not Available | Negative | 1750787 - 1753261 | 90154.7 |
| thiol:disulfide oxidoreductase | PviCFBP13507_07910 | Not Available | Negative | 1753403 - 1754047 | 24499.1 |
| zinc chelation protein secc | PviCFBP13507_07915 | Not Available | Negative | 1754156 - 1754356 | 7362.39 |
| xre family transcriptional regulator | PviCFBP13507_07920 | Not Available | Positive | 1754518 - 1755174 | 23762.4 |
| duf1654 domain-containing protein | PviCFBP13507_07925 | Not Available | Positive | 1755303 - 1755554 | 9541.08 |
| mfs transporter | PviCFBP13507_07930 | Not Available | Positive | 1755801 - 1756130 | 11747.6 |
| hypothetical protein | PviCFBP13507_07935 | Not Available | Negative | 1756140 - 1756631 | 18938.0 |
| hypothetical protein | PviCFBP13507_07940 | Not Available | Positive | 1756745 - 1757347 | 22213.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
