Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | CFBP13507 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1181068 bp
Thymine Count
1214519 bp
Guanine Count
1761031 bp
Cytosine Count
1725290 bp
Genome Length
5881917 bp
Protein-coding Genes
5114 genes
Non-Coding Genes
83 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dctp deaminase | PviCFBP13507_07845 | Not Available | Positive | 1738660 - 1739226 | 21294.4 |
| hypothetical protein | PviCFBP13507_07850 | Not Available | Positive | 1739339 - 1739551 | 7390.68 |
| ligase-associated dna damage response endonuclease pdem | PviCFBP13507_07855 | Not Available | Negative | 1739619 - 1740275 | 24319.3 |
| ligase-associated dna damage response dexh box helicase | PviCFBP13507_07860 | Not Available | Negative | 1740272 - 1742761 | 92154.9 |
| hypothetical protein | PviCFBP13507_07865 | Not Available | Negative | 1742999 - 1743196 | 7481.75 |
| histidine/lysine/arginine/ornithine abc transporter atp-binding protein | PviCFBP13507_07870 | Not Available | Negative | 1743322 - 1744086 | 28126.1 |
| succinylglutamate desuccinylase | PviCFBP13507_07875 | Not Available | Negative | 1744096 - 1745214 | 40622.6 |
| histidine abc transporter permease hism | PviCFBP13507_07880 | Not Available | Negative | 1745229 - 1745939 | 26647.9 |
| histidine abc transporter permease hisq | PviCFBP13507_07885 | Not Available | Negative | 1745936 - 1746664 | 26669.0 |
| abc transporter substrate-binding protein | PviCFBP13507_07890 | Not Available | Negative | 1746749 - 1747531 | 27846.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
